Co-authored-by: Louis <35883445+louist103@users.noreply.github.com>
Co-authored-by: Nicholas Estelami <NEstelami@users.noreply.github.com>
Co-authored-by: Random06457 <28494085+Random06457@users.noreply.github.com>

* remove ZAPD submodule

* git subrepo clone https://github.com/zeldaret/ZAPD.git tools/ZAPD

subrepo:
  subdir:   "tools/ZAPD"
  merged:   "ca229f19"
upstream:
  origin:   "https://github.com/zeldaret/ZAPD.git"
  branch:   "master"
  commit:   "ca229f19"
git-subrepo:
  version:  "0.4.3"
  origin:   "???"
  commit:   "???"

* git subrepo clone https://github.com/simonlindholm/decomp-permuter.git tools/decomp-permuter

subrepo:
  subdir:   "tools/decomp-permuter"
  merged:   "1e4b85a7"
upstream:
  origin:   "https://github.com/simonlindholm/decomp-permuter.git"
  branch:   "main"
  commit:   "1e4b85a7"
git-subrepo:
  version:  "0.4.3"
  origin:   "???"
  commit:   "???"

* Remove asm-differ

* git subrepo clone https://github.com/simonlindholm/asm-differ.git tools/asm-differ

subrepo:
  subdir:   "tools/asm-differ"
  merged:   "eaf72269"
upstream:
  origin:   "https://github.com/simonlindholm/asm-differ.git"
  branch:   "master"
  commit:   "eaf72269"
git-subrepo:
  version:  "0.4.3"
  origin:   "???"
  commit:   "???"

* remove asm-processor

* git subrepo clone https://github.com/simonlindholm/asm-processor.git tools/asm-processor

subrepo:
  subdir:   "tools/asm-processor"
  merged:   "85288fcd"
upstream:
  origin:   "https://github.com/simonlindholm/asm-processor.git"
  branch:   "master"
  commit:   "85288fcd"
git-subrepo:
  version:  "0.4.3"
  origin:   "???"
  commit:   "???"

* remove .gitmodules file

* Update REAMDE

* Update warnings

* Small env fixes: for git submodules & python3

Using `/usr/bin/env python3` is preferred over `/usr/bin/python3`
because it is compatible with virtualenvs, etc. It picks the version of
`python3` currently on the `PATH`, rather than the system-wide default.

For the git submodules, I had two issues:

The ZAPD repo is currently pointing at a commit not on the master
branch, which has to be specifically fetched. Adding `--remote` to the
update command fixes this.

The decomp-permuter has primary branch `main` not `master` like this
repo, so this has to be specified in `.gitmodules` when using `--remote`.

* Rework `git submodule update...` part of Makefile

* 1 scene done, Z2_SOUGEN OK

* All scenes OK

* Makefile improvements

* Use WIP ZAPD branch as submodule

* Add spawn rotation flag macro

* Fix bad merge

* Move scenes to be in their own subfolders

* Rename and restructure extracted baserom files

* Progress tracking for assets

* Add asset progress to csv

* Use master ZAPD

* Use distclean like in OOT

* Fix up a few things with the makefile

* Fix scenes not being dumped from ELF

Co-authored-by: Rozelette <Uberpanzermensch@gmail.com>

* Clean up .gitignore

* Set exec bit on all python and shell scripts

* Delete unused files

* Add decomp-permuter repo

* Update submodules